Nonprofit Financial Management: How to Prepare for Increased Oversight

Transformation strategies to prepare for the new era of nonprofit financial management.
Updated: August 26, 2025
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Nonprofit leaders who depend on government grants face both shrinking dollars and sharper questions about how funds are spent.

As leaders in nonprofit financial management transformation, BTQ Financial’s experts have helped 70 nonprofits successfully manage over $1 billion in operating budgets through dynamic conditions.

They share the reasons for this shift in scrutiny, and recommendations for organizations to ensure their finance functions are prepared, proactive, and transparent.

Shifting Financial Oversight

While sweeping oversight changes haven’t occurred yet, there are clear signs that expectations around accountability are tightening, especially for organizations receiving government funding.

1 Funding Uncertainty

Many nonprofits have experienced, or expect, reductions in government funding, creating uncertainty in planning and staffing.

2 Increased Scrutiny

From funders on how nonprofits are utilizing funds.

3 Federal Signals

Recent executive orders indicate a renewed federal focus on preventing fraud, waste, and abuse in public spending.

4 Pass-Through Entity Requirements

Increasingly demanding more documentation, active monitoring, and higher expectations from their subrecipients.

5 Emphasis on Internal Controls

Funders are pushing for stronger internal controls and real-time compliance, not just during audits but throughout the year.

Nonprofits unsure of how to plan, how to staff, and how to respond when the funding picture shifts should start with these key questions.

1. Do We Have Instant Financial Clarity?

Funder emails rarely wait for month-end. Data quality and system integration should enable you to tell your financial story in hours, not weeks.

“This isn’t just about access to reports, it’s about the quality of your data, how your systems talk to each other, and whether your team can tell the story behind the numbers.” 

1 Funder Question Simulation

Regularly simulate funder questions, particularly on spend-down variances and restricted fund usage, to assess response capabilities.

2 Understanding Regulations

Within government contracts.

3 Spend-Down Plans

To ensure effective and funder-approved utilization of funds throughout the year.

4 Effective Financial Reporting Tools

Investing in and regularly reviewing accounting and grant management software for accurate and efficient reporting.

5 Staff Understanding of Reports

All relevant staff should understand financial reports and be able to explain them to funders.

6 Ongoing Budget-to-Actual Monitoring

Monthly or at least quarterly cadence, involving both finance and program personnel to identify and address changes quickly.

7 Program Staff Involvement in Budgeting

Engaging program staff early in the budget process fosters greater accountability for spending and leads to a stronger, more realistic budget.

Anyone in contact with funders should understand how funds are being spent, even if that means doing a budget modification.

2. Do We Have Real Internal Controls?

Beyond having policies and procedures documented, nonprofits need to verify their internal controls are working in practice to prevent mistakes and ensure accountability.

Most organizations have policies and procedures written down somewhere, but the real question is: “Are those documents accurate and are staff following them?”

1 Comprehensive Documentation

Of policies and procedures manuals that are readily accessible and understood by all staff.

2 Regular Updates

To policies and procedures manuals to comply with new general accounting principles and changes in uniform guidance.

3 Spot Checks/Mini Audits

Of financial transactions helps identify and address issues before a formal audit.

4 Reviewing Past Mistakes

Analyzing previous audit reports or funder findings, as well as insights from mini audits, helps identify root causes of errors (e.g., staff training, software issues) and prevent recurrence.

“Spot checks are an opportunity, not a failure. It’s a chance for us to find out if there’s something that we missed, if a process is not being followed, someone’s not trained and it can be a really useful tool.”

3. How Fast Can We Turnaround Documentation Requests?

Funder fire-drills are becoming the norm. Nonprofits need systematic organization and regular retrieval system testing to quickly locate and provide documentation upon request.

1 Centralized Documentation

Establishing a centralized, easily accessible system for electronic documentation, including clear filing and naming conventions.

2 “Funder Ready” Folder

Containing approved budgets, signed contracts, audited financials, and registration/renewal documents.

3 Testing Response Time (aka Fire Drills)

Simulate a funder request and give the team a limited timeframe (ex. 24 hours) to gather and respond to the mock request. Debrief afterwards to identify obstacles and areas for improvement.

4 Real-Time Updates

Calendar regular times to refresh and update materials (e.g., liability insurance certificates, board lists) to avoid sending outdated information.

5 Nine-Month Audit Review Process

To proactively assess readiness for the annual audit cycle and create a culture of continuous preparedness.

“Have SOPs, even around how to store things electronically. At BTQ we have a very clear way of how we’re filing things and naming conventions, so if a new staff member comes on they’re easily able to find something.”

4. Are We Prepared for Informal or Discretionary Oversight?

A single unexpected email can build confidence or break trust based on how quickly and clearly you respond.

Beyond formal audits, organizations should prepare for unexpected requests, informal inquiries, and discretionary oversight that arrives without advance notice.

1 Strong Funder Relationships

Building close, consistent relationships with funders, including program officers and higher-level agency contacts, helps foster trust and anticipate upcoming needs.

2 Networking with Other Nonprofits

That share the same funders can provide valuable insights, advice, and contact information.

3 Leveraging Technology and Automation

To significantly reduce the time required to generate reports and respond to ad hoc requests, building funder confidence and freeing up staff for program activities.

“Building close consistent relationships, strong relationships with funders is very key. Sometimes that’s difficult… but when you can find that one person…having a good contact at a funder’s office is so helpful.”

Resources & Best Practices to Stay Current

The BTQ team recommends the following tools, resources, and best practices to keep up with regulatory changes and shifting federal priorities:

Technology

  • Grant-tracking and accounting systems that mesh (ledger ↔ grant)
  • Automation for GL detail exports and payroll allocations

Regulatory Intelligence

  • Grants.gov email alerts for Uniform Guidance updates
  • National Council of Nonprofits policy bulletins
  • Ask each funder about their own list-serves or portals

Best Practices

📞
Direct Funder Contact
Directly contact funders to understand their communication preferences and establish clear channels for ongoing dialogue.
🏛️
Leverage Nonprofit Resources
Utilize resources like the National Council of Nonprofits to access guidance and best practices for funding communications.
📋
Stay Compliant with Guidelines
Stay updated on uniform guidance requirements to ensure all communications meet federal and state compliance standards.
🔍
Monitor Regulatory Updates
Monitor federal websites and regulatory updates to stay informed of changes that may affect funding requirements or communication protocols.
🤝
Regular Program Officer Check-ins
Establish regular check-ins with program officers to maintain strong relationships and ensure transparent communication throughout the funding process.

Utilizing Partners for Oversight Preparation 

Greater scrutiny is coming, but nonprofits that tighten data quality, field-test controls, centralize documents, and cultivate funder relationships can answer tough questions with clarity and confidence.

“Being ready isn’t about catching mistakes. It’s about building structure so your mission keeps moving when oversight ramps up.”

BTQ Financial, a division of Consero, has spent over two decades refining the very practices nonprofits need to withstand rigorous oversight.

Partnering with BTQ delivers:

A 200-person bench of specialists: Directors, controllers, grant-optimization experts, and CFO-level strategists who act as an extension of your team.
Compliance and reporting: Generate detailed financial and compliance reports, maintain audit trails, and ensure adherence to regulations and donor requirements.
Financial analysis and planning: Monitor budgets, forecast future expenses, and conduct variance analysis to stay on top of your financial health.
Funder submission and processing: Automated approval workflows and integration with your financial systems.
Expense management and allocation: Track and allocate expenses to specific grants and contracts with precision, ensuring funds are used according to donor requirements.

Schedule an assessment today to start building a resilient and transparent finance function.

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